Proteomic analysis and differential expression in protein extracted from chicken with a varying growth rate and water-holding capacity

Chickens from a randomly bred genetic line were segregated into high and low growth rates and high and low water-holding capacities (WHCs). The objective of this study was to identify protein markers associated with slow and fast growth rates and low and high WHCs from water-soluble protein (WSP) and crude myofibrillar protein (CMP) extracts of chicken breast muscle. Proteins were fractionated using two-dimensional electrophoresis, and a total of 22 protein spots were selected, excised, and analyzed by in-gel tryptic digestion and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Proteins expressed in extracts from slow and fast growth rates and low and high WHCs included metabolic enzymes, such as creatine kinase, pyruvate kinase, triosephosphate isomerase, and ubiqitin; housekeeping proteins, such as heat shock protein; contractile proteins, such as myosin heavy chain; actin; and also MHC isoforms and actin isoforms. The mass spectra of 20 protein spots significantly matched (protein score >83; P < 0.05) an online database. In CMP, there were unique proteins that were present only in the fast-growth population: gi|118099530 , gi|20664362 , gi|71895043 , gi|114794125 , gi|297343122 , and gi|71895043 . This information identified protein markers associated with growth rate and water holding capacity. Some of those protein markers could be added to the chicken database.     

Sustainable Management of Nutrients in Forage-Based Pasture Soils: Effect of Animal Congregation Sites (5 pp)

Background, Aim and Scope   Grazing animals have a dominant effect on the movement and utilization of nutrients through the soil and plant system, and thus on the fertility of pasture soils. Grazing can accelerate and alter the timing of nutrient transfers, and increase the amount of nutrients cycled from plant to soil. Long periods, position of shade, and water resources for grazing cattle can influence the spatial distribution of soil biochemical properties including soil organic carbon (C), total extractable inorganic nitrogen (TEIN), and Melich 1 extractable total phosphorus (TP). The objective of this study is to test whether cattle congregation sites typical on most Florida ranches, such as mineral feeders, water troughs, and shade areas are more nutrient-rich and may contribute more nutrients to surface and groundwater supply than in other pasture locations under Florida conditions. Materials and Methods: Baseline soil samples around and beneath three congregations sites in established (>10 yr) grazed beef cattle pastures at the United States Department of Agriculture (USDA), Agricultural Research Service (ARS), Subtropical Agricultural Research Station (STARS), Brooksville, FL, were collected in 2003, 2004, and 2005. Results: The levels of soil TEIN and TP were significantly (p ≤ 0.001) affected by the interaction of congregation sites and distance away from the center of the sites. Mineral feeders had the highest concentration of TP followed by shades and water troughs. The concentrations of soil TP decreased almost linearly with distance (x = meter) away from the center of the mineral feeders (-5.24x + 55.10; R2 = 0.92; p ≤ 0.001) and the shades (-6.25x + 57.21; R2 = 0.85; p ≤ 0.001). However, the level of TP around the water troughs (-0.25x + 16.91; R2 = 0.09) does not appear to change significantly with distance, staying close to about 13-18 mg kg-1. The levels of TEIN decreased linearly with distance away from the mineral feeders from the center of the shades. A linear model can describe the relationship between TEIN and distance away from the center of shades: -11.3x + 78.2; R2 = 0.95; p ≤ 0.001. The shaded sites (34.25 ± 1.7 mg kg-1) had higher levels than the mineral feeders (7.22 ± 0.60 mg kg-1) or water troughs (10.06 ± 0.8 mg kg-1) sites. Discussion: The higher soil TP near and around the mineral feeders can be attributed to the presence of phosphorus in the supplemental feeds. The average level of soil TP in the mineral feeders of 34.05 ± 0.44 mg kg-1 was not high enough to be of environmental concern. Losses of soil phosphorus by overland flow are becoming a big concern when the concentrations for soil phosphorus exceeded 150 mg kg-1 in the upper 20 cm of soils. With TN, the shaded sites (34.25 ± 1.7 mg kg-1) had either higher levels than the mineral feeders (7.22 ± 0.60 mg kg-1) or water trough (10.06 ± 0.80 mg kg-1) sites. Higher TEIN content at the shade sites may have been more likely due to frequent urination of animals and lack of vegetation immediately adjacent to shades. The lack of vegetation within and/or near the shades then had no uptake mechanism for removal of inorganic nitrogen, unlike the heavy demand for inorganic nitrogen by bahiagrass in other areas of the pasture. An accumulation of TEIN immediately adjacent to shades could lead to a potential point source that would be susceptible to leaching or gaseous losses to the environment. Conclusions: Early results of the study are suggesting that cattle congregation sites in beef cattle operations in Florida are not nutrient-rich, therefore may not contribute more nutrients to surface and groundwater supply under Florida conditions. Recommendations and Perspectives: Since there is no apparent vertical build up or horizontal movement of TEIN and TP in the landscape, we can then surmise that cattle congregation sites may be considered not a potential source of nutrients at the watershed level, at least on the sand ridge soils in Florida. Further research is continuing, including sampling at cattle congregation sites at other locations in north and south Florida, which started in July 2004.     

Conceptual methodologies in agro-environmental systems

When continuous measurement of relevant above- and below-ground environmental factors is made, and the dynamics of crop growth and phenology is followed, it is shown that small-plot agronomic experimentation can provide information vital to the development and testing of simulation models. Such models for crops of maize (Zea mays) and the legume cowpea (Vigna unguiculata), grown as sole crops and in an intercrop system, were used to simulate yield at two separate sites in the main savanna farming zones in Ghana, West Africa. Simulation was carried out for these three cropping systems using 20 years of historical rainfall data for the two sites, investigating the effect on yield of management options which included time of planting, rate of nitrogen fertilizer application, and crop planting density.

The yield results of this series of simulations were then subject to two different types of analysis in order to assist the evaluation of agricultural options for the nation. The first analysis was an economic evaluation based on gross margins, but using the stochastic-dominance technique to rank the profitability of the alternative cropping and management systems.

The second, more general methodology employed was multi-criteria analysis (MCA). This analysis covered economic returns and their variability, the amount and quality of residue returned to the soil, and the aerial cover provided by the crop. Other factors which could affect the sustainability of production in the long term, but which could only be evaluated qualitatively, were also included in the analysis, as allowed in MCA methodology. The MCA was then carried out for three scenarios in which different weightings were given to economic outcomes and to factors which are believed to encourage ecological sustainability. These scenarios allow recognition of different priorities which might be given by traditional subsistence farmers as compared to commercial producers.

Outcomes of this broad analysis of development alternatives provided scientific support for the traditional Ghanaian practice of grain/legume intercropping which is also widespread in the tropics. The suite of methodologies illustrated by the case study appears to be suitable for the evaluation of alternative farming systems at the scale of a small nation such as Ghana.     

Genetic diversity of a natural population of Rhizobium leguminosarum biovar trifolii analysed from field nodules and by a plant infection technique

We compared trapping of Rhizobiumleguminosarum biovar trifolii isolates under field soil and non-soil environmental conditions. Isolates were obtained from white clover (Trifoliumrepens L.) and red clover (T. pratense L.) grown directly in the field and from plants inoculated with soil from the same site using a plant infection technique. Isolates were identified by genomic polymerase chain reaction (PCR) fingerprinting using primers derived from the enterobacterial repetitive intergenic consensus (ERIC) sequences. The isolates trapped from soil dilutions in the laboratory included a number of major ERIC types that were not found in the field trapped nodules, suggesting that sampling of clover Rhizobium strains from soil dilutions may not be representative of the field nodulating population.     

Cloning and expression of desoxyhemigossypol-6-O-methyltransferase from cotton (Gossypium barbadense)

Terpenoids play an important role in defense against insects and pathogens in cotton. These terpenoids contain phenolic groups. Metabolites in which the phenolic group has been converted to a methoxy group are less toxic to most insects and pathogens and thus may alter resistance. Here is reported the cloning of a gene from Gossypium barbadense that encodes the enzyme that methylates the phenolic group of desoxyhemigossypol (dHG) exclusively at the 6-position, dHG-6-O-methyltransferase (dHG-6-OMT). Partial peptide sequences from digests of purified dHG-6-OMT were used to design primers for RT-PCR amplification of cDNA fragments from poly(A) mRNA. Fragments were extended to full length using 5' and 3' RACE. The resulting cDNA codes for a 365-residue polypeptide with a calculated molecular weight of 40.6 kDa, in agreement with the molecular mass of purified dHG-6-OMT. When expressed in Escherichia coli, the bacterial lysates showed a high specificity for the methylation of desoxyhemigossypol, differentiating the cloned gene from other pathogen-induced methyltransferases.     

Stabilities of daidzin,glycitin, genistin,and generation of derivatives during heating

The soy isoflavones daidzin, glycitin, and genistin were purified from defatted soy flour using preparative-scale reverse-phase HPLC. The stabilities of the three isoflavones at different heating temperatures were investigated. Daidzin, glycitin, and genistin were lost at a rate of 26, 27, and 27% of their original concentration, respectively, after 3 min at 185 degrees C. At 215 degrees C, decreases of daidzin, glycitin, and genistin were 65, 98, and 74% after 3 min and 91, 99, and 94% after 15 min, respectively. The order of the thermal stabilities, from lowest to highest, was glycitin, genistin, and daidzin. Acetyl daidzin and acetyl genistin, daidzein, glycitein, and genistein were produced during heating at temperatures above 135 degrees C. The rate of binding of an acetyl group to form acetyl daidzin and acetyl genistin from daidzin and genistin was higher than the rate of loss of a glucoside group to form daidzein and genistein. However, acetyl daidzin and acetyl genistin decreased sharply at temperatures above 200 degrees C, while daidzein, glycitein, and genistein were relatively stable over 30 min. The stability of daidzein was higher than that of glycitein or genistein.     

Stable carbon isotope ratios of water-extractable organic carbon affected by application of rice straw and rice straw compost during a long-term rice experiment in Yamagata,Japan

ABSTRACT

Hot-water- and water-extractable organic matter were obtained from soil samples collected from a rice paddy 31 years after the start of a long-term rice experiment in Yamagata, Japan. Specifically, hot-water-extractable organic carbon and nitrogen (HWEOC and HWEON) were obtained by extraction at 80°C for 16 h, and water-extractable organic carbon and nitrogen (WEOC and WEON) were obtained by extraction at room temperature. The soil samples were collected from surface (0–15 cm) and subsurface (15–25 cm) layers of five plots that had been treated with inorganic fertilizers alone or with inorganic fertilizers plus organic matter, as follows: PK, NPK, NPK plus rice straw (RS), NPK plus rice straw compost (CM1), and NPK plus a high dose of rice straw compost (CM3). The soil/water ratio was 1:10 for both extraction temperatures. We found that the organic carbon and total nitrogen contents of the bulk soils were highly correlated with the extractable organic carbon and nitrogen contents regardless of extraction temperature, and the extractable organic carbon and nitrogen contents were higher in the plots that were treated with inorganic fertilizers plus organic matter than in the PK and NPK plots. The HWEOC and WEOC δ¹³C values ranged from ?28.2% to ?26.4% and were similar to the values for the applied rice straw and rice straw compost. There were no correlations between the HWEOC or WEOC δ¹³C values and the amounts of HWEOC or WEOC. The δ¹³C values of the bulk soils ranged from ?25.7% to ?23.2% and were lower for the RS and CM plots than for the PK and NPK plots. These results indicate that HWEOC and WEOC originated mainly from rice plants and the applied organic matter rather than from the indigenous soil organic matter. The significant positive correlations between the amounts of HWEOC and HWEON and the amount of available nitrogen (P < 0.001) imply that extractable organic matter can be used as an index for soil fertility in this long-term experiment. We concluded that the applied organic matter decomposed more rapidly than the indigenous soil organic matter and affected WEOC δ¹³C values and amounts.     

Effects of gaseous pollutants on forests in Eastern North America

The purpose of this paper is to summarize the current state of knowledge concerning direct forest damage caused by atmospheric gaseous pollutants. The major gaseous pollutants affecting forest growth are O₃, SO₂, and HF. Ozone is the most prevalent phytotoxic air pollutant on a regional scale in eastern North America. It has been demonstrated to cause foliar injury and growth effects on trees in both laboratory and field studies. Both SO₂ and HF have been found to cause damage to forests primarily in the vicinity of strong point sources. Case histories of forest damage are reported in the paper which describe foliar and radial growth effects, with associated volume losses. Threshold levels of the gaseous pollutants causing effects on forest growth are provided.     

Developing a practice

Trials were carried out on 11 farms to assess the effectiveness of 2.5 per cent w/v cypermethrin pour-on for the control of ticks on sheep. Treatment at the rate of 5 ml/10 kg bodyweight gave 92 per cent control of ticks on ewes for up to nine weeks and 88 per cent control on lambs for up to eight weeks.     

Isolation of Babesia spp. from asymptomatic human beings

Babesiosis is a worldwide tick-borne protozoan disease of a variety of wild and domestic animals. For decades, various babesia strains were considered host-specific. However, babesiosis has been diagnosed as the cause of acute illness in 13 human beings in recent years, three of whom died. Studies of babesiosis in domestic animals indicate that for every clinically demonstrable case, there are hundreds of cases of latent infection. In an effort to determine if human babesia infections might be present in Mexico, we selected as our testing ground an endemic rural area along the Gulf Coast where continuous epizootics of equine, bovine, ovine and canine babesiosis were known to occur. Of the 101 individuals examined serologically by the indirect hemagglutination (IHA) test using Babesia canis as antigen, 38 reacted at titers from 1 : 10 to 1 : 80. Blood from these reactors was injected into splenectomized hamsters. Hamsters inoculated with blood from three of the individuals showed babesia in their peripheral blood. The growth of the organism was established by subpassages into additional hamsters. The persons from whom the organisms were isolated were asymptomatic for babesiosis. None of the 29 individuals residing in Mexico City, which represented the urban population in the survey, reacted in the IHA test. This is the first documented finding of the latent form of human babesiosis.